_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-41
 Query name: gi|929112496|ref|XP_014067593.1| PREDICTED: selenoprotein H-like [Salmo salar]
 Query range: 7-129  (total 129)

 Target: /data/www-rg/seblastian_results/607331123/tempfiles/temptarget.fasta
 Chromosome: CM007959.1:subseq_28142349,102262_ Strand: -
 Positions:
 -Exon 1  52712        52833
 -Exon 2  52121        52263
 -Exon 3  51933        52036

 Redox box: YES

Query   AGRVLKRKASVKEESVEKRGKGEDDQPEIVTEGRRVVIEHC <---Intron---> KSURVYGRNAEGVRVALLAACPDLTVVLNPQKPRSKSFEVILV
         |||||||   /|    |||||||| |||||||/||||||| <   448bp    > |||||||||||||||||||||||||||||||||||||||||| 
Target  TGRVLKRKVETEESVEGKRGKGEDDHPEIVTEGQRVVIEHC                KSURVYGRNAEGVRVALLAACPDLTVVLNPQKPRSKSFEVILF
        agcgtacaggaggtgggaagaggggccgagaggcaggagct                aatcgtgcaggggaggccggtcgcaggcaccaccaaatggact
        cggttagatacaactagaggagaaaacattcagagtttaag                agggtaggacagtgtcttccgcatctttacaacggagtatttt
        atttggcgggcggcgggggtaagcccggtcaacgggctac                tacaagtgttcggcatccgtctacctgggccggcgtattagtgt
                                                                   *                                        

Query   EGEKE <---Intron---> VCLWSGIKKGPPRKLKFPEPEVVVSALEKALKTE
        ||||| <    84bp    > ||||||||||||||||||||||||||||||||||
Target  EGEKE                VCLWSGIKKGPPRKLKFPEPEVVVSALEKALKTE
        gggag                gtcttgaaagcccacatcgcggggtgcgagcaag
        agaa                atgtgcgtaagccgatatcacatttcctaactaca
        aaga                gttggagagacatcgggttgtgtattcggggagta
                                                               
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 320 ; UGA-SECIS: 557

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007959.1:subseq_28142349,102262_ Strand = - Positions = 51612 - 51537
 Found by:  Infernal (score=26.2) Covels (score=29.1)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -20.61

         ..(((((((.......(((((((((((((((.................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ((([(((((---....{[[{((((({{(((...................)))}})))))}]]}.....-.-.)))))])))
 target  GCUGGACGC---AGAAUGAUGAGGACUGACCAAACCGGGUUGCACCCCAGUCCUUCCUCUGAUGACCC-C-AGCGUCAAGC
                         ****           ^^^                         ****